Predicting Transcription Factor Binding Sites from ENCODE data using Machine Learning
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Updated
Jul 7, 2017 - Python
Predicting Transcription Factor Binding Sites from ENCODE data using Machine Learning
A pipeline for reporting information on G-quadruplexes relative to coding regions and non-aligned regions.
home-made scripts to manipulate sequence annotation file formats (gff / vcf / genbank)
Modify the gff export from Apollo, changing Name to ID.
Convert sequence IDs between ucsc/refseq/genbank
Semantically Interoperable Genome Annotations
CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.
scripts for RNA-Seq analysis
command lines tool to annotate miRNAs with a standard mirna/isomir naming
Efficiently keep track of changes to genomes
Gff-toolbox is a toolbox of commands that enables one to get the gist of their GFF annotation files, as well as to analyse them in different ways.
convert various features into a GFF-like file for use in genome browsers
💻 Interconverting FASTA, GFF, and CSV.
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