TwosampleMR and MultivariableMR perform with simple commands without prior knowledge or having to go through lengthy boring protocols
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Updated
May 24, 2024 - R
TwosampleMR and MultivariableMR perform with simple commands without prior knowledge or having to go through lengthy boring protocols
tooling for semantic search of NHGRI GWAS catalog
Find causal cell-types underlying complex trait genetics
Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data
Rapid standardisation and quality control of GWAS or QTL summary statistics
Explore the phenome ✨🎆✨
The multivariate MArginal ePIstasis Test
CoMorMent-Containers
Identifying pleiotropic genes via the composite test amidst the complexity of polygenic traits
An interactive graphical illustration of genetic associations and their biological context
🍸R version of SConES, a systems-biology approach to GWAS.
Adjacency-constrained hierarchical clustering of a similarity matrix
This project leverages PLINK for GWAS Quality Control, focusing on SNP analysis and PCA for ancestry insights, showcasing the vital role of bioinformatics in enhancing population genetics research.
Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
See https://biometris.github.io/statgenGWAS for a full description
This repository is my collection of pipelines for basic GWAS analysis, written in R to simplify, please cite original tools/approaches referred in the pipelines.
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