Haplo- and Diplotype Star Allele matcher for Drug Dosage Guidelines
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Updated
Jun 29, 2017 - Python
Haplo- and Diplotype Star Allele matcher for Drug Dosage Guidelines
Split a BAM file by haplotype support
This program leverages zero recombination clusters and their relative positions on a linkage group to impute phases for missing data with high fidelity.
Collection of several small tools. These tools stay here temporarily and may move to other major repositories as they evolve.
SNP pipeline using Snakemake for the Weisrock Lab's Tiger Salamander project.
Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)
A python parser to simplify and build the VCF (Variant Call Format).
Intersect multiple VCF files with haplotype awareness
An algorithm for recovering haplotypes from metagenomes
Long sequencing reads classifier
A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.
Scripts to automate the phasing with several tools
Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
ClairS - a deep-learning method for long-read somatic small variant calling
Proteogenomics database-generation tool for protein haplotypes and variants
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