Proteogenomics database-generation tool for protein haplotypes and variants
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Updated
Jul 8, 2024 - Python
Proteogenomics database-generation tool for protein haplotypes and variants
ClairS - a deep-learning method for long-read somatic small variant calling
Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
Scripts to automate the phasing with several tools
A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.
Long sequencing reads classifier
An algorithm for recovering haplotypes from metagenomes
Intersect multiple VCF files with haplotype awareness
A python parser to simplify and build the VCF (Variant Call Format).
Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)
SNP pipeline using Snakemake for the Weisrock Lab's Tiger Salamander project.
Collection of several small tools. These tools stay here temporarily and may move to other major repositories as they evolve.
This program leverages zero recombination clusters and their relative positions on a linkage group to impute phases for missing data with high fidelity.
Split a BAM file by haplotype support
Haplo- and Diplotype Star Allele matcher for Drug Dosage Guidelines
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