A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.

A pipeline to segment tissue from the background in histological images

adaptive color deconvolution for paper "Zheng et al., CMPB, 2019"

The repository contains a simple pipeline for training Nuclei Segmentation Datasets of Histopathology Images.

HistoSeg is an Encoder-Decoder DCNN which utilizes the novel Quick Attention Modules and Multi Loss function to generate segmentation masks from histopathological images with greater accuracy. This repo contains the code to Test and Train the HistoSeg

Preprocessing module for large histological images

Code to reproduce results of the Gigapixel Histopathological Image Analysis Using Attention-Based Neural Networks paper.

Segmentation of histological images and fibrosis identification with a convolutional neural network

The nuclei detection method on histology image proposed in the 2017 paper by Peikari et al.

Python library designed for tissue microenvironment spatial analysis

A Point Transformer with Federated Learning for HER2 Status Prediction