Identifying PMDs using a non-parametric HMM
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Updated
Mar 25, 2016 - C++
Identifying PMDs using a non-parametric HMM
Implementation of Hidden Markov Model (HMM). IS Petnica summer camp project on computer science department. Soon to be library for c++
Implementation of Viterbi algorithm and Hidden Markov Model in C++
dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.
Discrete Hidden Markov Model (HMM) Implementation in C++
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