NGS4ECOPROD - An easy-to-use conda environment and pipelines for metagenome sequence analysis

Analysis pipelines for genomic sequencing data

Scripts and data regarding Vampyrellida genomics.

VIral GEnome ASsembly pipelines for WGS

genome assembler for cleaning, mapping and assembling genomes.

code getter for illumina, pacbio, oxford long reads alignments.

A simple program to generate .vcf and plink format files from .idat files

metagenome simulation for targeted and reduced-representation sequencing

Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics using WGS

GATK WGS workflow

Analysis documentation for research into the variants associated with hyperparathyroidism. Illumina, germline, human, whole exome sequence (WES) data from the CCDHB.

Testing structural variant (SV) callers for illumina germline whole genome sequence (WGS) data (human).

RNAseq pipeline centered on Salmon

Assembly of chloroplast genome using long-reads and short-reads for Genomics Course 2021 (MSc Bioinformatics for Computational Genomics)

These scripts were used to bioinformatically process the NGS data associated with the manuscript entitled "Illuminating the bacterial microbiome of Australian ticks from companion animals with next-generation sequencing", authored by Telleasha L. Greay, Kimberly L. Evasco, Megan L. Evans, Paola Magni, Una M. Ryan and Peter J. Irwin. The raw data…

Mitochondrial genome assembly combining Pacbio SMRT and Illumina MiSeq paired-end technologies

Mitochondrial genome assembly using Illumina MiSeq paired-end reads

Data and scripts associated with H. limbata 2014 1st instar transcriptome

⚪ ➡️ 🔍 ℹ️ A suggested workflow, and accompanying scripts, to assemble Single Amplified Genomes (SAGs) from MDA derived Hi/MiSeq (Overlapped) Paired-End Illumina Libraries.

bash scripts used in the analysis of Illumina sequence data