attempts at a form interface for generating FHIR resources using C# or Python
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Updated
Dec 8, 2022 - C#
attempts at a form interface for generating FHIR resources using C# or Python
Programming Framework for Clinical Image Analysis. Python library for MRI data processing.
Annotation and Analysis of Multiplexed Imaging Data
PIXI is an XNAT plugin designed to help manage and analyze preclinical imaging data.
Radiology reporting templates
Experimenting with creating functionality similar to google forms with shiny apps and fhir
Management of a curated set of common tags for anatomic locations for imaging informatics and a basic site describing the project.
Companion code for the publication: Inglese, P., Huang, H., Wu, V., Lewis, M.R. and Takats, Z., 2021. Mass recalibration for desorption electrospray ionization mass spectrometry imaging using endogenous reference ions. biorXiv
R code and scripts to run the multiplexed imaging normalization methods, detailed in the "Quantifying and correcting slide-to-slide variation in multiplexed immunofluorescence images" paper.
Example OHIF plugin based using OpenLayers
Learning materials for https://github.com/qiicr/dcmqi
DeBias decouples global bias from direct interactions in co-orientation and co-localization data.
A table containing imaging analysis tools for biology, with a focus on calcium imaging.
Running cellprofiler on eddie3 / SGE clusters
Crowd-sourcing annotations of medical images to advance cancer research
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