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macs2

Here are 4 public repositories matching this topic...

ChrisBotos / Binary_Search_MACS2_peaks_Annotation_file

First ever Python Project: Allinging the highest points of MACS2 peaks with positions around gene starts from a gff file.

chip-seq binary-search macs2

Updated Jun 26, 2023
Python

sebastian-gregoricchio / SPACCa

Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples

somatic-variants mutation gatk mutations chip-seq somatic-mutations normalization mutation-analysis copynumber macs chip-seq-callers macs2 chipseq somatic-indels gatk4 chip-seq-data chip-seq-analysis chip-seq-peaks somatic-variant

Updated Oct 18, 2024
Python

tdayris / fair_macs2_calling

Snakemake workflow used to call peaks with Macs2

snakemake sambamba homer bowtie2 macs2 snakemake-workflow snakemake-wrappers

Updated Jul 31, 2024
Python

skchronicles / PeakCalling

Benchmarking ChIP-seq peak callers

music gem chip-seq sicer macs2 peak-analysis peak-calling broad-peaks narrow-peaks dfilter pepr

Updated Dec 11, 2018
Python

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