.NET DLL wrapper for reading Thermo .Raw files. Uses ThermoFisher.CommonCore NuGet packages provided by Thermo Fisher Scientific
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Updated
Feb 6, 2024 - C#
.NET DLL wrapper for reading Thermo .Raw files. Uses ThermoFisher.CommonCore NuGet packages provided by Thermo Fisher Scientific
Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data
Library for mass spectrometry projects
Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling
Software tool for identifying lipids in LC-MS/MS-based lipidomics data
Used to deisotope mass spectra and to detect features from mass spectrometry data using observed isotopic signatures.
MASIC generates selected ion chromatograms (SICs) for all of the parent ions chosen for fragmentation in an LC-MS/MS analysis, characterizing the peak(s) in each SIC, computing peak statistics including elution time of the peak apex, peak area, and peak signal/noise. It can also extract reporter ion abundances (e.g. iTRAQ or TMT).
Molecular formula discovery via bottom-up MS/MS interrogation
The Molecular Weight Calculator can be used to calculate the molecular weight and percent composition of chemical formulas and amino acids (peptides). It includes several other utility modules and is available as both a GUI version and a C# DLL version.
Software solution for common top-down proteomics tasks
Examines a series of MS data files (or data directories) and extracts the acquisition start and end times, number of spectra, and the total size of the data. In addition, it can create 2D-plot graphics of the m/z values vs. time for QA purposes.
Computes the percent of the residues in each protein sequence that have been identified, based on a list of identified peptides. A graphical user interface (GUI) is provided to allow the user to select the input files, set the options, and browse the coverage results.
MS_targeted is an open-source command-line pipeline for statistical analysis of mass spectrometry metabolomics data.
Converts an mzIdentML created by MS-GF+ to a tab-delimited text file.
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Complementary Finder and MSn deconvolution processing nodes for Thermo Proteome Discoverer 2.x.
InfernoRDN can perform various downstream analyses on large scale datasets from proteomics and microarrays
C# reader/writer for mzIdentML files (.mzID). Also supports reading mzML files.
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