metabarcoding
Here are 35 public repositories matching this topic...
Data processing workflow and supplementary data for Li et al. 2019 - Ground-truthing of a fish-based environmental DNA metabarcoding method for assessing the quality of lakes
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Jun 5, 2019 - R
R mased batch sequence downloader, with primer development and in silico evaluation capabilities
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Sep 20, 2019 - R
Datasets and code used to create figures in "Hajibabaei et al., 2019. COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems. PLoS ONE 14(9): e0220953."
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Dec 20, 2019 - R
Datasets and code used to create figures in "Hajibabaei et al., 2019. Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples. PLoS ONE 14(12): e0225409."
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Dec 20, 2019 - R
Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape
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Apr 22, 2020 - R
Public repository of data and analyses from Dirks and Jackson (2020), "Community structure of Arbuscular Mycorrhizal Fungi in Soils of Switchgrass Harvested for Bioenergy", Applied and Environmental Microbiology 86 (19)
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May 4, 2020 - R
Code and plots for the paper of Walden et al., 2021, https://doi.org/10.1093/femsec/fiab081
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Jun 22, 2021 - R
Scripts for paper Vaulot et al. 2022
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Dec 13, 2021 - R
Contains scripts for biodiversity assessments of European lakes
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Mar 1, 2022 - R
A custom bioinformatic workflow for UPDX (Universal Parasite Detection assay) sequences analysis.
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Mar 25, 2022 - R
Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)
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Jul 6, 2022 - R
Data & Code Supplement for "Environmental DNA as a management tool for tracking artificial waterhole use in savanna ecosystems"
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Aug 9, 2022 - R
A R script for the study of the prokaryotic community of the sponge Dactylospongia metachromia
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Jan 29, 2023 - R
Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
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Mar 22, 2023 - R
A set of functions for filtering erroneous sequences in eDNA metabarcoding data
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Mar 30, 2023 - R
Protist Ribosomal Reference database (PR2) - SSU rRNA gene database
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Apr 19, 2023 - R
A primary goal of this research was to characterize vent plume biogeography across a spatial gradient. This study was done in collaboration with OceanX during the 2021 Young Explorers Program.
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May 24, 2023 - R
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