The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
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Updated
Jun 8, 2024 - MATLAB
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
memote – the genome-scale metabolic model test suite
An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
Genome-scale model of Yarrowia lipolytica.
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles
KEGG Module Evaluation Tool
A manually curated database of human gut metabolic modules.
Genome-scale metabolic model of Methylococcus capsulatus.
Genome-scale metabolic model of Rhodotorula toruloides
epigenome scale metabolic modeling for cancer metabolism
CHAP: Modeling Metabolic Pathways as Groups (with Augmentation)
Tool for the reconstruction of context-specific metabolic models based on omics data from several sources
Metabolic pathway inference using non-negative matrix factorization with community detection
Diversity-based enumeration of optimal context-specific metabolic networks
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