MMseqs2: ultra fast and sensitive search and clustering suite
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Updated
May 23, 2024 - C
MMseqs2: ultra fast and sensitive search and clustering suite
A complete pipeline for metagenomic analysis
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
sensitive and precise assembly of short sequencing reads
A tool to infer metagenomic sample composition
MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data
Scalable high-throughput short-read open reading frame prediction
A C and Python implementation of latent strain analysis for eigengenome partitioning.
tools collection of Sipros for stable isotopic mass spectrum meta proteomic research
GETS: a Genomic Tree based Sparse solver. This package accompanies an article to be published in the forthcoming Birkhäuser-ANHA book "Explorations in the Mathematics of Data Science" --- "A genomic tree based sparse solver" by Timothy A. Davis and Srinivas Subramanian.
Software for monitoring metagenomes using nanopore sequencing reads
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