An end-to-end script to convert Illumina shotgun sequences and metadata into full-blown diversity tables and visualizations.
-
Updated
Jun 2, 2021 - Shell
An end-to-end script to convert Illumina shotgun sequences and metadata into full-blown diversity tables and visualizations.
Arche: a functional-optimized annotator for microbial meta(genomes)
Dockerfile to set up omics DB and preinitialized databases
Intra-Clade Dynamics of Candidatus Accumulibacter phosphatis over Time using de novo Extraction of Strains from Metagenomes
Comparing 3 different metagenomics approaches with ONT's long read sequencing method
Qiime 2, an advanced bioinformatics platform, specializes in analyzing metagenomic data. With a modular plugin architecture, integrated workflows, and visualization tools, Qiime 2 facilitates reproducible and transparent analyses, supporting both command-line and GUI interactions.
plotting metagenomics otu abundances
Shell script for extracting sequences from high-degree nodes in metagenomic assembly graphs
ALL-BGCs: An Integrated Pipeline for Metagenome Mining for Biosynthetic Gene Clusters
The analysis of shotgun metagenomic sequencing data generated from Oxford Nanopore Technology (ONT).
Comparing and evaluating mitogenome assemblers
Code of the article that describes the molecular epidemiology analyses of OsHV-1 virus by whole genome sequencing approaches in French shellfish growing areas.
The coral microbiome: Towards an understanding of the molecular mechanisms of coral-microbiota interactions
The text files in this repository are tools that I've used during metagenomic assembly including: trimming, quality checking, assembly, dereplication, annotation, and analysis.
Scripts used by George S. Long
A flexible and modular pipeline for metagenomic analysis.
Build scripts for bioinformatics applications used by MGX
Course repository for MBDP metagenomics course 2022
This script filters low abundant reads from Bracken outputs for downstream analyses
Add a description, image, and links to the metagenomics topic page so that developers can more easily learn about it.
To associate your repository with the metagenomics topic, visit your repo's landing page and select "manage topics."