Collect info about IRIDA uploads for display in monitoring site
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Updated
Oct 24, 2023 - Python
Collect info about IRIDA uploads for display in monitoring site
Automated upload of sequence data to IRIDA platform
Collect outputs from BCCDC-PHL/routine-sequence-qc pipeline for usage by BCCDC-PHL/routine-sequence-qc-site
Automated uploading of sequence data into IRIDA instances, used in conjunction with auto-irida-azure-upload
Small tools/scripts written in python
Nextflow Wrapper for Mykrobe
Automated genomic analysis of HCV sequence data
Nextflow wrapper for ktmeaton/ncov-recombinant
Automation of Genomic Analyses for Carbapenemase-Producing Organisms (CPOs)
Pipeline to make pairwise comparisons of matched fasta sequences.
Align against a reference genome and call variants
Collect Routine QC for Nanopore Sequence Data
Collect QC data from Carbapenemase-Producing Organism (CPO) genomic analyses
Tools for phylogenetic data analysis including visualization and cluster-computing support.
Automated genomic analysis of SARS-CoV-2 sequence data
Genomic analysis pipeline for genotyping of Hepatitis C Virus
Make mutated copies of DNA components in BioPython
A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees
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