Longitudinal OSA Experiments - Lesion, Microbiome, Metabolome
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Updated
Sep 18, 2020 - Jupyter Notebook
Longitudinal OSA Experiments - Lesion, Microbiome, Metabolome
A reference-free statistical approach to diversity-generating & mobile genetic element discovery
Workflow and R scripts for Giongo et al. (2024)
Docker RStudio container for Duke University IBIEM 2017 - Integrative Bioinformatics for Investigating & Engineering Microbiomes
A python implementation of the decontam R package for ASV filtering.
Analysis of Multiple Circadian/Longitudinal Datasets
An interactive web application that provides a flexible graphical user interface (GUI) to the Reverse Ecology analysis package for R
Codes for the statistical analysis that investigates the impact of high-fat diet on gut microbiome and serotonergic gene expression in the raphe nuclei.
Reusing publicly available whole transcriptome data to determine the state of the microbiome at time of sampling.
Supporting materials for the manuscript "Characterisation and comparison of semen microbiota and sperm function in men with infertility, recurrent miscarriage, or proven fertility
microbiome analysis of ant colonies
Vaginal microbiome data analysis using QIIME2 in women with gynecologic cancer.
Microbiome Amplicon Analysis and Visualization
process raw reads from ubiome
R scripts used for the analysis of microbiomes of nursery-reared Acropora cervicornis
This repository presents the files and methods used for statistical analyses of the faecal bacterial community profiles and SCFA data generated from calves raised on three different allowances of milk replacer.
Convert the American Gut Microbiome Project phenotype .xml files into a single .csv file.
En este repositorio se crearán diferentes flujos de trabajo para el análisis del microbioma con Bioconductor.
MicrobioSee2, a desktop sofware for visulization of microbiome result, which contian multiple modules, such as Alpha Diversity, Beta Diversity, Species Conpositions, volcano plot, and pie chart.
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