motif
Here are 24 public repositories matching this topic...
Motif discovery for DNA sequences using multiobjective optimization and genetic programming.
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Jul 24, 2018 - Python
a program to predict transcription factor binding sites from single-nucleotide deletion MPRAs
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Aug 16, 2018 - Python
A tool to search for motifs within the whole genome or regions of interest
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Feb 10, 2019 - Python
Simulate gene expression data where gene expression is determined by a linear influential factor, such as motifs.
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Oct 23, 2020 - Python
Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.
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Jan 28, 2021 - Python
This script takes a FASTA file and a list of motifs (.txt) and generates a .SVG image showing the motifs locations on each sequence.
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Feb 25, 2021 - Python
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Apr 14, 2021 - Python
Simple Python parser for MotEvo.
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May 25, 2021 - Python
Encode your name in music
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Oct 12, 2021 - Python
A script that computationally designs a vaccine
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Jan 9, 2022 - Python
Report, proposal, and mvp implementation of a simple tool for use in finding motifs in genome data. 🧬
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Mar 1, 2022 - Python
Generate image of genes given fasta file and motif file. The image identifies exons, introns, and locations of motifs within the gene.
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Mar 10, 2022 - Python
A python implementation of the SiMPle-Fast algorithm for audio motif detection
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Mar 19, 2022 - Python
A sparsity aware implementation of "Biological Network Comparison Using Graphlet Degree Distribution" (Bioinformatics 2007)
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Aug 11, 2022 - Python
An implementation of "EdMot: An Edge Enhancement Approach for Motif-aware Community Detection" (KDD 2019)
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Nov 6, 2022 - Python
Calculate the distribution of motifs in RSG Graph
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Dec 5, 2022 - Python
A Python library for detecting patterns and anomalies in massive datasets using the Matrix Profile
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Apr 23, 2023 - Python
V. M. Gumerov, E. P. Andrianova, M. A. Matilla, Karen M. Page, Elizabet Monteagudo-Cascales, A. C. Dolphin, T. Krell, I. B. Zhulin (2022). Amino acid sensor conserved from bacteria to humans.
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Jul 25, 2023 - Python
Python package to plot sequence logos
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Sep 21, 2023 - Python
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