multiqc
Here are 16 public repositories matching this topic...
Count your fastq-formatted rna-seq reads with Salmon
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Apr 10, 2020 - Python
Align reads over a reference genome, filter aligned-reads, and mark duplicates
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Apr 24, 2024 - Python
A Snakemake workflow for quality control assessment of Illumina NGS data using FastQC and MultiQC
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Apr 3, 2023 - Python
MultiQC plugin interacting with the Illumina Genologics Clarity LIMS
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Feb 14, 2019 - Python
Snakemake workflow for Salmon quantification and FastQC quality controls
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Mar 20, 2021 - Python
A workflow automation script: demultiplex the library sequence, run quality checks, deliver to archiving and processing afterwards
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Sep 23, 2023 - Python
A Snakemake Workflow for using PolyA_DB and UCSC LiftOver with CellRanger
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Jan 27, 2022 - Python
Map and post-process your bams for SNP calling
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Mar 10, 2021 - Python
MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.
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Aug 4, 2023 - Python
Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto
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Aug 23, 2019 - Python
AlphaFold-based Protein Analysis Pipeline
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Sep 19, 2022 - Python
A miniature example of a MultiQC plugin.
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Mar 15, 2023 - Python
TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various use-cases of mNGS in mind.
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Jun 5, 2024 - Python
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