MultiQC plugin interacting with the Illumina Genologics Clarity LIMS
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Updated
Feb 14, 2019 - Python
MultiQC plugin interacting with the Illumina Genologics Clarity LIMS
Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto
Count your fastq-formatted rna-seq reads with Salmon
Map and post-process your bams for SNP calling
Snakemake workflow for Salmon quantification and FastQC quality controls
A Snakemake Workflow for using PolyA_DB and UCSC LiftOver with CellRanger
AlphaFold-based Protein Analysis Pipeline
A miniature example of a MultiQC plugin.
A Snakemake workflow for quality control assessment of Illumina NGS data using FastQC and MultiQC
MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.
A workflow automation script: demultiplex the library sequence, run quality checks, deliver to archiving and processing afterwards
Align reads over a reference genome, filter aligned-reads, and mark duplicates
TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various use-cases of mNGS in mind.
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