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Apr 5, 2018 - Python
nanopore
Here are 91 public repositories matching this topic...
Preprocessing of raw reads obtained using ARTIC's protocol for sequencing SARS-CoV-2 genome.
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Feb 23, 2022 - Python
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
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May 25, 2024 - Python
🔬 Genotyping tool for genome-edited samples, utilizing nanopore sequencer target sequencing
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Jun 7, 2024 - Python
Pipeline for analysing M. tuberculosis nanopore reads and getting drug susceptibility information.
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Jul 16, 2018 - Python
A toolkit to harmonize and filter structural variations across methods and samples.
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Jan 16, 2024 - Python
Target site duplication assessment from alignment file and genomic location of insertion sites.
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Dec 21, 2023 - Python
CLI tool for processing single locus SMF data
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Jun 8, 2024 - Python
snakemake pipeline based on nanopolish
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Feb 6, 2020 - Python
A toolkit for monitoring ONT MinION sequencing, followed by data analysis, for viral genomes amplified with tiled amplicon sequencing.
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Mar 26, 2024 - Python
Evaluating Nanopore-based bacterial variant calling
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May 21, 2024 - Python
Clair3-RNA - a long-read small variant caller for RNA sequencing data
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Apr 19, 2024 - Python
CLI tool to link methylation tags between two files
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Nov 16, 2023 - Python
ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data
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Dec 11, 2023 - Python
Nanopore base caller based on original Chiron adding Dropout and SRU
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Nov 16, 2017 - Python
MinION Open Nucleotide Identifier for Continuous Analysis - an open source pathogen identifier for real-time analysis on MinION output
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Dec 24, 2018 - Python
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