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Apr 5, 2018 - Python
nanopore
Here are 223 public repositories matching this topic...
antibiotic resistance profiling of nanopore reads
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Jan 12, 2023 - HTML
Preprocessing of raw reads obtained using ARTIC's protocol for sequencing SARS-CoV-2 genome.
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Feb 23, 2022 - Python
Slides for presentation to the Queensland Mycobacterium Reference Laboratory 24/02/2022
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Feb 24, 2022 - JavaScript
Analysis documentation for part of the reference genome assembly of the humble guinea pig. Oxford Nanopore Technologies (ONT) pore-c data.
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Mar 2, 2023 - HTML
Nextflow pipeline to assemble genomes from nanopore reads.
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May 6, 2024 - Nextflow
Toolkit and pipeline for processing short- and long-read RNA sequencing data.
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Sep 5, 2022 - Jupyter Notebook
NGS4ECOPROD - An easy-to-use conda environment and pipelines for metagenome sequence analysis
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Jun 13, 2024 - Shell
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
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May 25, 2024 - Python
Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
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Mar 11, 2024 - Rust
Pipeline with GUI for nanopore-sequencing.
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Jul 19, 2019 - Java
Benchmarking for long-reads assembler
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Apr 5, 2021
🔬 Genotyping tool for genome-edited samples, utilizing nanopore sequencer target sequencing
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Jun 7, 2024 - Python
😎 This repository contains scripts that I wrote for data analysis and visualization.
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Jun 13, 2024 - Jupyter Notebook
Pipeline for analysing M. tuberculosis nanopore reads and getting drug susceptibility information.
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Jul 16, 2018 - Python
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