Python scripts for design of 5'/3' RACE-based NGS panels, and the following data analysis
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Updated
Sep 6, 2023 - Python
Python scripts for design of 5'/3' RACE-based NGS panels, and the following data analysis
Genomics unit analysis pipelines toolkit: a collection of NGS workflows writtin in python3 and snakemake
Custom scripts and workflows used in the genomics and population analysis of oat crown rust (Puccinia coronata f. sp. avenae) preprint (bioRxiv 2023.09.18.557855). All steps performed in Linux environment or R.
Bioinformatics is a field of information technology and biological science, which use to managing, storing and analyzing these biological data such as DNA, RNA and protein, In this repository I'm use python to create various types of program for analyzing biological data
A repository for efficient population genomic analysis using Snakemake workflow.
Coverage graph creator from BAM files (included in the SSV-Conta package)
Coverage graph creator from BAM files (included in the SSV-Conta package)
Snakemake pipeline to merge gnomAD VCF files
various tools that help with deep sequencing analysis
A tool to calculate the equipolar amounts of two amplicons for upcoming sequencing with NGS
CRISPRSeqSim is a tool that simulates results of CRISPR/cas editing fragments target sequencing.
FASTQ read trimming by the highest scoring path algorithm
Determines the most probable sequences missing from a greater set of genomic reads.
💻 Analysis codes and bioinformatic pipelines for paper "HIV-1-induced host genomic R-loops dictate HIV-1 integration site selection"
This repository covers research paper implementations in the field of Genomics, Next Generation Sequencing, Bioinformatics and Machine Learning.
Exercises and Implementation
Generates randomly generated fastQ files from a template and upstream sequence.
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