Clair3-RNA - a long-read small variant caller for RNA sequencing data
De novo construction of isoforms from long-read data
De novo clustering of long transcript reads into genes
Long RNA-seq analysis workflow
Genome assembly steps (Haliotis asinina)
A Python library to visualize and analyze long-read transcriptomes
A Snakemake pipeline to go from raw .subreads.bam PacBio Iso-Seq to assembled mRNA isoforms (FASTA format)
A collection of scripts for our PacBio paper
De novo clustering of long transcript reads into genes
Process PacBio Sequel and Sequel II subread BAMs into CCS FASTQ files
A collection of scripts for our PacBio paper
Inter-sample analysis of SQANTI classifications
Build highly accurate transcripts from long-read RNA data
Iso-seq and Kallisto integration
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