Visualization of Functional Enrichment Result
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Updated
May 15, 2024 - R
Visualization of Functional Enrichment Result
MSigDB gene sets for multiple organisms in a tidy data format
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles
MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data
R package for pathway analysis in scRNA-seq data
An R package for multi-dimensional pathway enrichment analysis
This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
Flexible gene set enrichment analysis
GRAPH Interaction from pathway Topological Environment
Retinal ganglion cells regeneration in 2 days post optic nerve crush retina | Lydia Tai | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School
Package to calculate functional similarity between genes https://biocor.llrs.dev
Use Jaccard index and constituent genes to identify groups of similar pathways
Investigating the use of hierarchical modelling for pathway analyses
This repository contains the code for the project: Transcriptomic meta-analysis reveals up-regulation of gene expression functional in osteoclast differentiation in human septic shock
Curated list of analysis pipelines for biological & clinical interpretation of data-driven findings
Survival based clustering of gene expression data for disease subtyping
Population-based pathway analysis of SNP-SNP coevolution
PAVER: Pathway Analysis Visualization with Embedding Representations
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