A comprehensive tutorial about GWAS and PRS

PLINK reader for Python.

Fixes and new release. PuTTY Tunnel Manager allows you to easily open tunnels, that are defined in a PuTTY session, from the system tray. You can also move the tunnels from PuTTY to PuTTY Tunnel Manager. This allows you to use PuTTY just for SSH shell sessions (without opening tunnels), and use PuTTY Tunnel Manager just for tunneling.

Compressed storage for SNP data

Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R

A matrix-like wrapper around PLINK .bed files

A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert between formats, merge datasets or subset by individuals in each of the formats.

tips and tricks in genome-wide association studies - a tutorial

Toolkit for the efficient construction and analysis of polygenic risk scores in R.

The IKMB GWAS Association Testing Pipeline

Automated Tool for Global Screening Array analysis

Windows frontend for digging SSH tunnels and creating socks proxies

Script package to automate waking and playing your PS3 from your (remote) Windows PC

Setup and starter script for the PLINK R plugin.

Work with PLINK from R

An integrated pipeline for analysis and visualization of Population Structure and Relatedness based on genome-wide genetic variant data

Automate repetitive Putty/SSH tasks, a free alternative to Ansible

Perform liftover on plink files

LocusZoom in Jupyter notebooks