A collection of useful tutorials for Protein Science
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Updated
Jun 29, 2015 - Python
A collection of useful tutorials for Protein Science
Some miscellaneous scripts I made to do protein analysis using the pytraj library
Object-oriented processing of PDB files in Python
local PDB manager
A script that computationally designs a vaccine
BPL is an Python app to solve Loop Closure Problems.
A Python Framework for Integrating Classical and Quantum Mechanical Simulation Data, Experimental Data, and Cheminformatics into a Unified Predictive Engine for Macromolecular Design
Deep functional residue identification
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
Versatile computational pipeline for processing protein structure data for deep learning applications.
Lattice2Backbone is a software tool that converts lattice representations of protein structures into detailed, carbon alpha-only backbone structures, bridging the gap between simplified models and comprehensive biological analysis in structural biology and bioinformatics.
CA-2-HCOMB is a tool for simplifying single-chain protein structures from PDB files into manageable models like various honeycombs, retaining essential information for in-depth computations. It's efficient for large datasets and machine learning, and user-friendly for research and education.
A Python API for the RCSB Protein Data Bank (PDB)
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
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