Proof of concept of a SRA to trimmed FASTQ (including quality control) pipeline with Nextflow
-
Updated
Jan 17, 2022 - Nextflow
Proof of concept of a SRA to trimmed FASTQ (including quality control) pipeline with Nextflow
A pipeline for assembling and annotation of vectors
Collect basic sequence QC metrics from nanopore reads
Remove host reads from a microbial pathogen sequence dataset by aligning against a reference genome. Verify that the reads were removed using Kraken2/Bracken
A Nextflow wrapper for HistoQC
A simple pipeline for bacterial assembly and quality control
Pipelines for the production of Treeval data
Add a description, image, and links to the quality-control topic page so that developers can more easily learn about it.
To associate your repository with the quality-control topic, visit your repo's landing page and select "manage topics."