A simple pipeline for bacterial assembly and quality control
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Updated
May 14, 2024 - Nextflow
A simple pipeline for bacterial assembly and quality control
Pipelines for the production of Treeval data
A Nextflow wrapper for HistoQC
Collect basic sequence QC metrics from nanopore reads
Proof of concept of a SRA to trimmed FASTQ (including quality control) pipeline with Nextflow
A pipeline for assembling and annotation of vectors
Remove host reads from a microbial pathogen sequence dataset by aligning against a reference genome. Verify that the reads were removed using Kraken2/Bracken
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