RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
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Updated
Jul 3, 2024 - Python
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
Preprocess, noise-reduction, threshold & quantify images to get box plots for each class (mainly cell cultures of different cel llines). Colocalization due to a naive trick of counting all overlapping signals/pixels. Could be done in ImageJ as well, but i thought this is better suited than fiddling with macros.
A workflow designed to perform multiplexed image analysis, specialising in (but not limited to) analysis of metal distribution in LA-ICP-TOFMS data.
pyAMARES, an Open-Source Python Library for Fitting Magnetic Resonance Spectroscopy Data
Absolute quantification package based on quantms.io
Bayesian Quantification with Black-Box Estimators
Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
A framework for Quantification written in Python
An advanced persona-driven role-playing system with global faithfulness quantification and optimization. In memory of the Koishi's Day of 2024.
MyoQuant🔬: a tool to automatically quantify pathological features in muscle fiber histology images. Demo version deployed at: https://lbgi.fr/MyoQuant
Python interface to detect and quantify intranuclear proteins
QuantificationLib is an open-source library for quantification learning.
MARISSA - Magnetic Resonance Imaging Software for Standardization
Quantifying the dynamics of long-range cell-cell mechanical communication paper code
MyoQuant-Streamlit is a demo web application to showcase usage of MyoQuant. Demo version deployed at: https://lbgi.fr/MyoQuant
Deeep learning model for quantifying spatilized j-resolved Magnetic Resonance Spectroscopy
flameplot is a python package for the quantification of local similarity across two maps or embeddings.
A pipeline to assess the quantification of transcripts.
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