Snakemake workflow for transposable element RNA-Seq using TEtranscripts
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Updated
Jun 14, 2024 - R
Snakemake workflow for transposable element RNA-Seq using TEtranscripts
Differential gene expression analysis for samples with replicates using STAR-DeSeq2 pipeline
Automatic RNA-Seq Pipelines with Interactive Report
Single Cell RNA-seq analysis of Persister Cells to unearth key stress pathways and core, differential genes of those respective pathways
Workflow for differential gene expression analysis for non-replicate samples using DEGseq
The package mixhvg uses mixture of highly variable gene selection methods to improve gene selection.
This repo is a template for running differential gene expression analysis of RNA-seq count data followed by gene set enrichment analysis. This workflow is run in R using Rmarkdown. It is based around the popular R packages, DESeq2, fGSEA, and others.
Bioinformatic scripts for the manuscript concerning interchromosomal interaction and gene expression patterns of K562 cells treated by hemin
Performing RNA-Seq data analysis and quality control using DESeq2 in R.
RNA-seq workflow: gene-level exploratory analysis and differential expression.
Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
Repo for TotalRNASeq Pipeline Development for AG Hornef, UK Aachen
A repository for RNA-seq workflow
Quality Control, Mapping and Reads Count for RNA-Seq Analysis
Neste projeto descrevo diferentes parâmetros e opções para a execução de programas necessários à análise de Rna-Seq, além de incluir informações e opniões que possam facilitar a escolha da melhor opção que se adque à análise em questão.
Analysis of mutations at codon 625 of SF3B1 gene in uveal melanoma
Pipeline for analyzing RNAseq data of human and mouse - beginner friendly with minimal user inputs
Automated DE analysis by DESeq2
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