Dynamical systems methods for RNA velocity analysis
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Updated
May 19, 2021 - Python
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rna-velocity
Here are 7 public repositories matching this topic...
Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments
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Aug 15, 2023 - Python
Simulation based inference of differentiation trajectories from RNA velocity fields.
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Aug 22, 2023 - Python
Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images
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Nov 8, 2024 - Python
CellRank: dynamics from multi-view single-cell data
data-science
machine-learning
bioinformatics
genetics
trajectory-generation
markov-chains
manifold-learning
single-cell-genomics
single-cell-rna-seq
cell-fate-transitions
fuzzy-clustering-analyses
rna-velocity
cell-fate-determination
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Oct 7, 2024 - Python
Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
dynamo
scrna-seq
differential-geometry
dynamical-systems
vector-field
scslam-seq
potential-landscape
nasc-seq
sci-fate
scnt-seq
rna-velocity
cell-fate
rna-jacobian
rna-acceleration
rna-curvature
rna-divergence
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Oct 29, 2024 - Python
𝒫robabilistic modeling of RNA velocity ⬱
probabilistic-programming
transcriptomics
pyro
probabilistic-models
single-cell-genomics
single-cell-rna-seq
rna-velocity-estimation
multiomics
deep-generative-model
developmental-trajectories
rna-velocity
rna-splicing
single-cell-multiomics
cell-fate-determination
rna-splicing-analysis
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Updated
Nov 12, 2024 - Python
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