a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
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Updated
Jun 19, 2024 - Python
a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
Clustering scRNAseq by genotypes
A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and covariation patterns between interacted cell types.
This repository stores the scigenex R library.
Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.
Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing
A tool to quantify transposable elements expression in scRNA-seq
Discovers nested gene co-expressing modules
Cell type pipes for R
An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
Nextflow pipeline for extracting and counting clonal barcodes
R Package for interrogating clonal data
Integration analysis with Scanpy and scRNAseq TME from blueprint
scRNA cluster via Seurat package
Explore and share your scRNAseq clustering results
Differential expression and allelic analysis, nonparametric statistics
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