A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results
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Updated
Oct 2, 2024 - TypeScript
A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results
COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Utilities for building standardized command-line interfaces for biosimulation software packages
PySCeS biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Registry of containerized biosimulation tools that support a standard command-line interface
Tool for validating that biosimulation software tools implement the BioSimulators standards for simulators
AMICI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Ontology of algorithms for analyzing biological models, their parameters, and their outputs
tellurium biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations
Command-line program and scheduled GitHub action for publishing the ModelDB model repository to BioSimulations
Tutorials for BioSimulators
Repository of rule-based models implemented with the BioNetGen model language (BNGL) and command-line program for publishing RuleHub to BioSimulations
Command-line application for publishing the Physiome model repository of physiological models to the BioSimulations repository for simulation projects
XPP mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
GillesPy2 biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
MASSpy mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
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