A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results
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Updated
Jun 20, 2024 - TypeScript
A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results
PySCeS biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Registry of containerized biosimulation tools that support a standard command-line interface
AMICI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Ontology of algorithms for analyzing biological models, their parameters, and their outputs
tellurium biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Utilities for building standardized command-line interfaces for biosimulation software packages
Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations
Command-line program and scheduled GitHub action for publishing the ModelDB model repository to BioSimulations
Tool for validating that biosimulation software tools implement the BioSimulators standards for simulators
Tutorials for BioSimulators
Repository of rule-based models implemented with the BioNetGen model language (BNGL) and command-line program for publishing RuleHub to BioSimulations
Command-line application for publishing the Physiome model repository of physiological models to the BioSimulations repository for simulation projects
XPP mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
GillesPy2 biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
MASSpy mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
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