scRNA-seq and scATAC-seq utilities
A R Shiny App for single-cell analysis
Containerized workflow for single cell detection of loss of Y chromosome and other mosaic chromosomal alterations in chronic kidney disease
graph-based cell type annotation toolkit for single-cell RNA-seq, ATAC-seq, and spatial omics
Binary Factor Analysis: a dimensionality reduction tool for noisy, high throughput single cell genomic data
Single cell ANANSE Gene-regulatory-network analysis from Seurat objects
Scripts for sincle cell multiome analysis
Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq
Workflow for analysis of healthy human kidney by snRNAseq and snATACseq
Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
Analysis Pipeline for Single Cell ATAC-seq
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
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