Single Cell guided Pangenome analysis pipeline using SPAdes, CheckM, GTDB-Tk, Prokka, Roary and extensive quality control.
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Updated
Jul 18, 2022 - Nextflow
Single Cell guided Pangenome analysis pipeline using SPAdes, CheckM, GTDB-Tk, Prokka, Roary and extensive quality control.
modules for processing and analyzing single cell data using Nextflow
MARS-seq v2 pre-processing pipeline with velocity
Complete analysis workflow for single-cell/nuclei RNA-sequencing data.
A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.
An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
Pipeline to generate Molecular Pixelation data with Pixelator (Pixelgen Technologies AB)
A single-cell RNAseq pipeline for 10X genomics data
Comprehensive pipeline for donor demultiplexing in single cell
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