nRex: Germline and somatic single-nucleotide, short indel and structural variant calling
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Updated
Jul 5, 2024 - Shell
nRex: Germline and somatic single-nucleotide, short indel and structural variant calling
Structural variant benchmark of challenging medically relevant genes
Some workflows I wrote for my phd projects
MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation
A workflow for using SpeedSeq to align and call SVs from WGS data
De novo genome assembly, phylogenetics, comparative genomics analysis, and functional variant annotation
Guide to installing, using, and interpreting structural variant finders. Includes example scripts for running tools on UCLA's Hoffman2 and a description of how to use the machine learning combination method FusorSV.
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