A toolkit to harmonize and filter structural variations across methods and samples.
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Updated
Jan 16, 2024 - Python
A toolkit to harmonize and filter structural variations across methods and samples.
Fragment-Aware Local Assembly for Short-reads
Convert SV VCFs to BED, a wrapper for bcftools query
A suite of Python-based command line tools to visualize structural variation
SV genotyper for long reads with a variation graph
Supporting material for H3Africa Structural and Copy Number Variant paper: summary data and scripts
Processing and annotation of somatic structural variants
A de novo genome breakpoint sequence assembly algorithm
Structural variant calling and functional annotation in five mice lines selected for specific traits and a control line.
Kmer Analysis of Pileups for Genotyping
A benchmarking tool for structural variation (SV) detection tools
Hybrid approach for detection of Insertions and Deletions from NGS data
Validate SV with Split-Reads
Website for the Ewing Group.
CMSC 191 - Implementation of the structural variant visualization using D3.js and jQuery
Some workflows I wrote for my phd projects
Runs several variant callers that align an assembly to a reference
Code used to discover structural variants, SNP, Indels that were applied to rare variant analysis
Targeted genotyper for complex polymorphic genes
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