You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
The lib CBioInfCpp.h contains 3 groups of functions for C++: "Input-Output", "Working with strings", "Working with graphs". Data structures "Adjacency vector" and "Adjacency map" are implemented in the last one (i.e. in "Working with graphs"). See About_CBioInfCpp for details.
Replication & from scratch implementation of the paper: Phoophakdee, B., & Zaki, M. J. (2007, June). Genome-scale disk-based suffix tree indexing. In Proceedings of the 2007 ACM SIGMOD international conference on Management of data (pp. 833-844).
A library for fuzzy-string-searching using suffix trees and levenschtein automatons to perform extremely fast search queries on large data sets. Serialize and deserialize functions allow suffix trees to persist (and drastically reduce preprocessing time).