Spatial bio-chemical reaction model editor and simulator
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Updated
May 31, 2024 - C++
Spatial bio-chemical reaction model editor and simulator
LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (SBML). It offers language bindings for C, C++, C#, Java, JavaScript, MATLAB, Perl, PHP, Python, R and Ruby.
SPARCED model creation and simulation package.
Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
Design Explorer and Viewer for Iterative SBML Enhancement of Representations
Spatial Model Simulator with SBML Model
System Dynamics script utilities
An integrated software environment for multi-algorithm, multi-timescale, multi-spatial-representation simulation of various cellular phenomena
In silico research group's bioinformatics toolbox for network and machine learning analysis
To show how to use odeint for biochemical simulation
An organism simulation framework based on cell growth and resultant emergent phenomena.
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