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targeted-sequencing

Here are 5 public repositories matching this topic...

beroukhim-lab / ascets

This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm-level copy-number variant calls and arm-level weighted average log2 segment means from segmented copy number data.

cnv targeted-sequencing

Updated Jan 31, 2024
R

CTrierMaansson / DNAfusion

Identification of gene-fusions, including EML4-ALK

r genetics next-generation-sequencing gene-fusion variant-calling liquid-biopsy bioconductor-package targeted-sequencing circulating-tumor-dna

Updated Oct 25, 2023
R

srinew / Targeted_RNA-seq_Heatmap

Create a normalized heatmap for targeted RNAseq count matrix using user-defined housekeeping gene normalization.

bioinformatics rna-seq r shiny heatmap ngs targeted-sequencing

Updated Feb 6, 2020
R

sfilges / umiAnalyzer

Tools for analyzing UMIErrorCorrect output

variant-analysis targeted-sequencing unique-molecular-identifiers

Updated Nov 14, 2022
R

amatov / NeurodegenerationDrugToxicology

data-mining gene-expression kullback-leibler-divergence dimensionality-reduction pharmacogenomics principal-component-analysis breast-cancer targeted-sequencing relative-entropy alzheimers-disease-detection parkinsons-disease-detection finger-prick-blood at-home-testing disease-biomarkers receiver-operating-characteristic-curve differential-distributions toxicology-analysis multivariate-exploratory-data-analysis transcriptomics-markers neurodegeneration-detection

Updated Jun 25, 2024
R

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