Profile hidden Markov model (HMM) to identify the Kunitz domain in protein sequences, using MSA-guided training and optimization.
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Updated
Jul 1, 2024 - Python
Profile hidden Markov model (HMM) to identify the Kunitz domain in protein sequences, using MSA-guided training and optimization.
Program and package that retrieves nucleotide coding sequences from NCBI that correspond to a set of input protein sequences.
Comprehensive Python client for the Uniprot REST API
🧬 Seja bem-vindo ao Repositório de Algoritmos em Bioinformática! Aqui você encontrará materiais e exercícios do curso ministrado no 1º semestre de 2024 na UNIFESP (Universidade Federal de São Paulo).
Store the bioinformatic information in a python object given a Uniprot ID
Pipeline plugins for PALADIN, providing HPC support, abundance (taxonomy, go terms), customized reports, etc
From taxonomic affiliations to annotated proteins using UniProt database.
A Python script to map PDB ID + chain ID to UniProt ID.
UniProt Id Mapping through API
PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
UniProt Demo highlights some of the features of the UniProt API and dsome useful analyses with the available data.
Look up annotations for subcellular location by Uniprot ID.
This code was written and used to perform the comparative interactome analysis of β-arrestin1 and 2.
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