Flask-based webapp and API used to query and generate tabular reports of data relating to clinically-observed genetic variants
-
Updated
Jan 3, 2018 - Python
Flask-based webapp and API used to query and generate tabular reports of data relating to clinically-observed genetic variants
Simulate Variants for provided genomic coordinates
Python tool built for a user-friendly interface for searching individual variants, batch queries, and exploring gene regions from the Ensembl database.
Socket programming
bcftools for dealing with bcf files.
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
pyAmpli: an amplicon-based variant filter pipeline for targeted enriched resequencing data
wraparound reversi, a reversi variant, with a terminal and discord bot interface. Bots available include MCTS and greedy heuristics.
Detect SARS-CoV-2 variants using outputs from the ncov2019-artic-nf pipeline and ncov-watch.py
MitoX: exploring mitochondrial variants and gene expressions from single cell sequencing assays
GemDb mongo variants/annotations hub
Detect SARS-CoV-2 variants using outputs from the ncov2019-artic-nf pipeline
Using gnomad-browser's GraphQL updated API to retrieve total joint allele frequencies, exome/genome allele frequencies and homozygote counts as well as population specific numbers for a batch of variants.
Add a description, image, and links to the variants topic page so that developers can more easily learn about it.
To associate your repository with the variants topic, visit your repo's landing page and select "manage topics."