Variant calling format (vcf) file genomics pipeline for HPC and cloud
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Updated
Oct 12, 2017 - C
Variant calling format (vcf) file genomics pipeline for HPC and cloud
Subsample a VCF file in order to fix the minor allele frequency across SNPs
A fast and flexible program to annotate/interpret genetic variants in VCF/BCF file
VCF/Bcf genotypes filtering using htslib
genotyping by Mapping-free ALternate-allele detection of known VAriants
Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
vcfpp.h + htslib + Rcpp = fast VCF/BCF https://doi.org/10.1093/bioinformatics/btae049
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