Personal Cancer Genome Reporter (PCGR)
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Updated
May 10, 2024 - R
Personal Cancer Genome Reporter (PCGR)
Cancer Predisposition Sequencing Reporter (CPSR)
visual analysis of your VCF files
Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer
Suit of R-scripts to perform landscape genomic analyses
Scripts in R for Landscape Genomics Analyses v.2
Tumor-only variant calling
Population Genomics Pipeline used for SNPs data from VCF files.
Basic R package for VCF reformatting (json and tab-delimited text)
PopGenHelpR is an R package that estimates commonly used population genomic statistics and generates publication quality figures.
Cancer variant data from genome-wide association studies (GWAS)
A variant annotation tool that parses vcf files and fetches variant information from the Ensembl Variant Effect Predictor (VEP) REST API
Scripts in R for analyses of Isolation by Distance (IBD) - PART 2 in LANDSCAPE GENOMICS PIPELINE
An R package and Web App for efficient quality control of human whole-genome and whole-exome datasets
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