Add MultiplexSegmentation consumer and zip consumer. #420
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This new version conflates bucket env vars to STORAGE_BUCKET and removes the DEBUG env var for LOG_LEVEL.
willgraf
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Apr 6, 2021
* Update bucket-monitor helm chart with unified STORAGE_BUCKET env var. (#414) * Update copyright to 2021 (#415) * Upgrade default GKE version to 1.16 (#412) * Update autoscaler and janitor to latest release for better compatibility with 1.16. (#419) * Add new consumer and zip consumer for "multiplex" jobs. (#420) * Quote all annotations in chart templates. (#421) * Refactor multiplex consumers to mesmer consumers (#422) * Update referenced version to 1.5.0 (#423) * Bump tracking model to TensorFlow 2 based version. (#426) * Bump frontend chart to 0.3.0 and redis-consumer chart to 0.5.0 (#427)
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The Multiplex consumer is a new job type that segments images based on 2 input channels, nuclear and cytoplasm. There are several files that are changed to add the new job:
prometheus-redis-exporteradds the job queue be exported to Prometheus.QUEUESenvironment variable has been updated in theautoscaler,redis-janitor, andfrontend.prometheus-operator.For more information on the details of the job, see
deepcell.applications.MultiplexSegmentation.This PR may serve as a future example of all the necessary changes required for adding new job types.