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Version 1.3.2 #24

Merged
merged 42 commits into from
Dec 12, 2023
Merged

Version 1.3.2 #24

merged 42 commits into from
Dec 12, 2023

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wkumler
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@wkumler wkumler commented Nov 30, 2023

This PR implements RaMS version 1.3.2, with read access expanded to OpenChrom documents (credit to @ethanbass), additional helper functions, and some bugs squashed.

ethanbass and others added 23 commits April 25, 2023 13:03
Implementing check-namespace function when reading in mzML, needs testing
Replacing awkward and inefficient Reduce(Map()) construction even if it was fun to use both in the same line
rbindlist() complains where rbind() filled
Upgraded from warning to error and didn't change unit check to reflect
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codecov-commenter commented Nov 30, 2023

Codecov Report

Attention: 13 lines in your changes are missing coverage. Please review.

Comparison is base (3ffa687) 85.31% compared to head (f264345) 85.57%.

Files Patch % Lines
R/extraHelperFunctions.R 86.66% 10 Missing ⚠️
R/grabMSdataCode.R 94.73% 3 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##           master      #24      +/-   ##
==========================================
+ Coverage   85.31%   85.57%   +0.26%     
==========================================
  Files           5        6       +1     
  Lines        1171     1276     +105     
==========================================
+ Hits          999     1092      +93     
- Misses        172      184      +12     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

I just can't pass checks with it. It requires netcdf which is a complicated install on Linux and it's not worth it for a few lines in the single vignette.
sample() can return the input vector occasionally, not sure how to guarantee avoidance
@wkumler wkumler merged commit 7101bd5 into master Dec 12, 2023
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3 participants