-
Notifications
You must be signed in to change notification settings - Fork 25
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Define clones within each group #279
Labels
enhancement
New feature or request
Comments
Hi @Ngort, thanks - yes i can certainly add this. I'm currently thinking if i add a free form list
|
can you try install the version at #280 pip install git+https://www.github.com/zktuong/dandelion@update-cmd-for-external and let me know if this works? ddl.tl.define_clones(..., additional_args = ['--gf', GROUP_FIELD, ]) # if separate each entry in GROUP_FIELD into its own string if there's multiple |
This is perfect! It works like a charm. |
This was referenced Jul 11, 2023
Closed
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Is your feature request related to a problem?
I have data from multiple replicates pooled together, each with an identity assigned by a metadata column. I want the defined clones to be within each group, and the edges across groups to be of zero weight.
Right now the DefineClones.py code run is defined as:
Could we add something that serves as argument for
--gf
aka--group_fields
?Describe the solution you'd like
I want the defined clones to be within each group, and the edges across groups to be of zero weight.
Describe alternatives you've considered
Slicing the data and running the algorithm.
Additional context
No response
The text was updated successfully, but these errors were encountered: