For all games, it would be nice to make a backup of the game, in case the installation fails, or just so the user can play either copy.
The user can do this manually, but adding a simple "make a copy of the game folder" option should be reasonably easy
If a user wants to restore their original version (to re-patch or otherwise), they need to manually delete the game and then re-download, then re-install it.
This is especially important for the Console arcs, which share chapter 4.
We should remember to remind users that steam sync won't work on the duplicate copy/steam won't launch the duplicate copy, and any other gotchas with the other copy.