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17f2b9f
Updated and tested NeuroML2 import
pgleeson Oct 28, 2021
bb81941
Use moose.neuroml2.reader
pgleeson Oct 28, 2021
abe0b3f
Merge branch 'master' into nml2_updates
pgleeson Nov 10, 2021
f994a0c
Harsha's changes
analkumar2 Nov 17, 2021
7532827
Merge branch 'zombie_gone' of https://github.com/BhallaLab/moose-core…
analkumar2 Nov 17, 2021
c615047
copy issue solved by deleting library
analkumar2 Nov 17, 2021
5bdbbaf
Harsha's changes for test_reader.py
analkumar2 Nov 17, 2021
34d2408
Solved filename issue
analkumar2 Nov 17, 2021
50124f8
test_createCellPrototype asserting the name of the cell issue
analkumar2 Nov 17, 2021
47fd38c
Merge pull request #1 from analkumar2/NeuroML2
pgleeson Dec 9, 2021
917638e
Update githubaction.yml
pgleeson Dec 13, 2021
b328586
Update githubaction.yml
pgleeson Dec 13, 2021
2dcc5b9
Fix for input list
pgleeson Dec 14, 2021
1accd3c
Update githubaction.yml
pgleeson Dec 16, 2021
0db5cc0
Update setup.py
pgleeson Dec 17, 2021
1cf9d95
Merge branch 'master' into nml2_updates_3
pgleeson Apr 28, 2022
0612ffb
Remove my copy actions file
pgleeson Apr 28, 2022
60c9456
Merge branch 'master' of https://github.com/BhallaLab/moose-core into…
analkumar2 Jun 1, 2022
ed8b664
Merge branch 'nml2_updates_3' of https://github.com/OpenSourceBrain/m…
analkumar2 Jun 1, 2022
cf79bc4
test_connectivity unittest for Neuroml2
analkumar2 Jun 3, 2022
3d25fcd
resolved seg fault in test_connectivity in test_reader.py
analkumar2 Jun 3, 2022
bd19801
Corrected eqn to calculate Ra
analkumar2 Jun 3, 2022
51129df
passiveCell.nml tested
analkumar2 Jun 3, 2022
7cea73c
tests single compartment firing neuroml2 cell
analkumar2 Jun 10, 2022
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18 changes: 17 additions & 1 deletion python/moose/neuroml2/README
Original file line number Diff line number Diff line change
@@ -1,3 +1,19 @@
Update 2021-10-28 Padraig Gleeson

reader.py updated to work with Python 3.

To test, run:

python run_cell.py # example of a passive cell
python run_hhcell.py # example of a HH cell

Note: older test_*.py files are still giving errors, but may be out of date


===============================

Previous status:

NeuroML2 is a moving target and the current parser was generated from
the schema publicly available on Jul 28 10:18:38 2013 using the
generateDS.py module.
Expand All @@ -18,4 +34,4 @@ The other python files in this directory were hand-coded. So you may
need to tweak them in case NeuroML2 has some incompatible changes or
adds new types.

- Subhasis Ray, 2016-04-17
- Subhasis Ray, 2016-04-17
2 changes: 1 addition & 1 deletion python/moose/neuroml2/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -61,7 +61,7 @@
import moose.utils as mu

__author__ = 'Subhasis Ray'
from moose.neuroml2.reader import NML2Reader

from .reader import NML2Reader

# __init__.py ends here
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