0.1.6

What's Changed

• Sync template to version 0.1.26 by @IvanHCenalmor in #47
• Template 0.1.28 and the plugin versions the app needs by @guijacquemet in #49
• Sync template to version 0.1.28 by @IvanHCenalmor in #48

Full Changelog: 0.1.5...0.1.6

0.1.5 - Avoid admin rights during uninstallation

LabConstrictor template has been synchronized and updated to avoid administrative rights during the uninstallation process.

On top of that some bugs were fixed since previous release.

0.1.4

What's Changed

• Sync template to version 0.1.17 by @IvanHCenalmor in #36
• ci: pin third-party GitHub Actions to full commit SHAs by @guijacquemet in #37
• Declare QuPath as a host, add a tests workflow, fix the host names in the README by @guijacquemet in #39
• Pin LabConstrictor-Tools to v0.3.0-alpha.1 by @guijacquemet in #38
• Sync template to version 0.1.18 by @IvanHCenalmor in #40

Full Changelog: 0.1.3...0.1.4

0.1.3

What's Changed

• Relocalize 2D: choose the matcher (auto, quad, triangles, graph, hashing) by @guijacquemet in #16
• Relocalize 2D: segmentation settings, existing masks, seed and time limit, grouped form by @guijacquemet in #18
• Windows post_install: register the app version; .bat files checked out with CRLF by @guijacquemet in #17
• Narrow the .bat line-ending rule to app/bash_bat_scripts (fix for #17) by @guijacquemet in #20
• Docs audit: README lists the new Relocalize 2D settings; link to the human test protocol by @guijacquemet in #19
• NucleiSky tools: only a real no-match is "no match"; masks validated; tests check placement (audit prompt 11) by @guijacquemet in #21
• Installer hooks: template audit fixes and the tools package from its GitHub archive by default by @guijacquemet in #22
• pre_uninstall: the registry warning names a command that works by @guijacquemet in #23
• pre_uninstall: warn only for a real leftover entry, name the files to delete by @guijacquemet in #24
• Relocalize 2D: a new run replaces the previous alignment overlay and aligned query by @guijacquemet in #25
• Relocalize 2D: return the nuclei it used as points (reference_nuclei, query_nuclei) by @guijacquemet in #26
• Segmentation device dropdown (auto / cpu / cuda / mps) by @guijacquemet in #27
• Match the notebook's controls; outlines of the used nuclei; match inside a region by @guijacquemet in #28
• Merge bridge-test into main: Napari/Fiji tools (Relocalize 2D) by @guijacquemet in #32
• Require pixel sizes in the tools: missing calibration is a refusal by @guijacquemet in #34
• Sync template to version 0.1.16 by @IvanHCenalmor in #35

Full Changelog: 0.1.2...0.1.3

0.1.2

Merge pull request #31 from CellMigrationLab/docs/app-centre-manifest…

0.1.1 - LabConstrictor fixes

Some bugs were found on LabConstrictor. After synchronising the scripts with the template, those bugs are fixed and a new executable should be created as one of the bugs was that external source code was not correctly integrated. This directly affects NucleiSky and should improve users installation and experience with the desktop App.

0.1.0 - Preprint version

NucleiSky preprint release

This release marks the first public version of NucleiSky accompanying our preprint:

**NucleiSky enables cross-scale multimodal registration of microscopy data using nuclei constellations **bioRxiv, posted June 29, 2026
DOI: https://doi.org/10.64898/2026.06.29.735028

NucleiSky provides constellation-based point-set registration utilities for microscopy in 2D and 3D, with a focus on aligning partial views, ROIs, and subvolumes to larger reference images or tissue volumes using landmark geometry rather than pixel similarity.

This preprint release includes:

• Core 2D and 3D registration workflows
• Python package installation via PyPI
• Documentation for data preparation, workflows, QC, and troubleshooting

This version is intended as the reference software release for the preprint. Interfaces, defaults, and optional backends may continue to evolve in later versions as we expand testing and user feedback.

If you use NucleiSky in your work, please cite the preprint and report issues or workflow feedback on GitHub.

0.0.5

Merge pull request #11 from CellMigrationLab/template-sync-0.1.6-to-0…

0.0.4

GitHub Action - Updated files because of notebook and/or requirements…

0.0.3

GitHub Action - Updated files because of notebook and/or requirements…